A few updates. First off, though failures of the upper timing chain tensioners are common in the VR6, this was a failure of the lower timing chain. A close visual inspection of the chain showed what appeared to be a lot of wear in the links prior to failure.
There is no pcv valve on this car, but the pcv hoses are intact and show no leaks. Two issues did compromise the cleanliness of the intake air. (1) I was running a K&N air filter for about the last 47K miles. (2) At some point a leak developed in the Secondary Air Injection system. This is supposed to draw filtered air through the head into the exhaust for 30 seconds when the car is started cold. However when the right pipe breaks, unfiltered air can be admitted to the engine. I repaired the leak, but I don't know how long it ran this way.
The first thing I did after I completed the swap was drain the M1 0W40 from my wife's car, grabbing a sample in the process, and replace it with GC. Her car has 173K on it, and as I imagine a Mercedes M112 engine is more expensive to swap I want to use the best oil possible for it. I sent the M1 sample to Blackstone, they said I can extend my OCI from 5K to 7K. Trouble is I've been running 10K OCI's, or longer as the Mercedes FSS suggested. Her engine appears dirty inside too, though not as bad as my VW. I will run the GC to 5K, change the oil, pull a sample, and compare Blackstone results of GC to M1 0W40.
The VW is currently in the clean phase of an Auto-RX treatment using Rotella 5W40 synthetic. The replacement engine didn't look that clean either. Oh yes, I did replace the timing chains and tensioners with new when I did the swap. Rear main seal and clutch, too. And I put a stock Mann air filter back in.
As an aside, I'd run M1 15W50 in a 1980 Scirocco, 1987 GTI, and 1988 Pathfinder with great results. The Scirocco went 240K, the Nissan 215K, and both engines looked cleaner than either of the current vehicles.