I'm not sure of why this is so in the manual, but a few things we can discuss ...
- can't be the rpm; I would think that is governed at a max by the ECM; don't know why the max rpm allowance would be any different as rpm "red line" is to protect the mechanical hard parts, not a combustion process. I'm going to guess the max rpm to be somewhere between 2800 and 3200 rpm? it's not like 2800 rpm at 7k feet is any different than 2800 rpm at 2k feet of altitude; rpm is rpm.
- could be air-density related; less air might make for a slightly dirtier combustion event (more soot ??? IDK - just a stab at a guess here) However if it's a turbo, that should make up for most of the loss.
- probably has something to do with the DEF and/or DPF, but I'm not an expert on these so I cannot offer any justification past a swag
This is one topic that would be very interesting to go right to the source; contact JD tech lines, etc. It will be hard; their first response is going to be "contact your local dealer".
We don't see this in OEM mainstream automaker manuals; altitude is not a "severe service" factor (albeit it seems just about anything else is .... )