Trinket,
Since the torque converter in auto transmissions hold so much fluid (several quarts), you may want to drain, fill with conventional fluid and then drain again to get most of the old stuff out first. Not sure what you want to accomplish by running the autorx here, but simply doing two flushes has worked well for me in the past.
Most auto transmissions are practically indestructable as long as you keep the fluid changed. You could run synthetic if you like, and lots do. However, I would submit that you're still going to get a build up of wear metals in the fluid that float around and cause wear even faster, synth or not. I tend to be of the camp that simply replaces filter and fluid annually and just use a good quality conventional. Haven't lost a transmission yet!!!
Best of luck,
Ashley