99 Taurus cooling fan runs only when heater is on.

Just a wild guess but maybe the AC pressure switch stuck in a closed position? Maybe try disconnecting the connector? It should be on one of the AC hoses near the accumulator.
I'll try to tomorrow when I can see what I'm doing.
 
Check for power at the large terminals in the relay block if you have power at both with no relay installed you may be dealing with a short in the fuse box.
I'll try it and update with the results.
 
The red wire is a typical "hot when key on" circuit that goes to a lot of things. The PCM activates the relays individually by grounding the other end of the coil.
This is really standard car electrics.
 
The red wire is a typical "hot when key on" circuit that goes to a lot of things. The PCM activates the relays individually by grounding the other end of the coil.
This is really standard car electrics.
Vehicle electrics and wiring are beyond my abilities.
 
If the wiring diagram on the first page is correct, I see no way that the fans would still work with the relays pulled out unless the load side wiring of the load side relay pins for both relays is shorted together.
 
If the wiring diagram on the first page is correct, I see no way that the fans would still work with the relays pulled out unless the load side wiring of the load side relay pins for both relays is shorted together.
Should I try replacing relay box ?
 
Should I try replacing relay box ?
You can at least unbolt it and get a look at the bottom. It should be apparent if anything has cooked or corroded. You can also use that wiring diagram and a test light to see if you have power to the wrong relay pins (with the relays removed).
 
Should I try replacing relay box ?
You should probably unbolt it and look underneath it to see if you see any obvious wiring damage. Those fans are getting power somehow if you have the relays removed.

When testing the female pins in the fuse box that the relay goes into, you should have two powers and one ground per relay and this is with the circuit loaded so key on, engine off.

There are two sides to a relay. One is the control side which are pins 85 & 86 in the diagram which when activated, closes the switch on the load side which are pins 87 & 30 which operates the load which in this case are your fans.

The control side of the relay will have one power and one ground. The load side will have one power which on the diagram is pin 87 on the high side relay and pin 30 on the low side relay. On the diagram it's hard to determine which pins on the control side are supposed to be power and ground but in a lot of cases, the PCM will provide the ground for the control side. You will have to use a test light on pins 85 & 86 for both relays to determine which is which but that is if you have the correct signals going to them.
 
You can at least unbolt it and get a look at the bottom. It should be apparent if anything has cooked or corroded. You can also use that wiring diagram and a test light to see if you have power to the wrong relay pins (with the relays removed).
I used a test light already. 2 out of 4 pins have power.
 
Update: Finally figured it out. At some point , someone had attempted to run what looks like a toggle switch. I found a small wire that had been ran from the relay box to the fan harness. Once I got it back to how it should be , the fans went back to working normally. Now they do not work without the fuse or relays.
 
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