Today's Update: Jeep appears to be fixed. Hallelujah!
Dealership ran a diagnostic: All fuel injectors within spec, fuel pressure okay, compression tests within spec, electrical system okay, ignition coil okay, intermittent miss. Tech pulled spark plugs (ones my son just installed) and found one that was defective, apparently internally, because there was no evidence of any cracks externally. They put in NGK spark plugs and it runs fine now. Son got the Autolite spark plugs back and is taking them back to Autozone for a refund. Dealership only charged him $150 too, so that was good, considering other potential issues.
Thanks for all the replies and suggestions.