Distilled water would be better. Purified water still contains minerals that shouldn't be in the cooling system. Some of them even add minerals for taste and preservatives. It's not going to end the life of your car by having it in there, but I would use distilled water from now on.
Distilled water has almost zero minerals in it and is very close to 100% pure water. Using it may help remove any minerals that have accumulated in the system from purified water. If you can flush the system, great, I would at least try to drain it as much as possible, as in opening any block drains it may have, replacing the thermostat, draining the water pump housing if possible, etc.
Again, purified water is probably not going to kill your engine, but every tutorial and manual I've read always states to use distilled water because it contains almost no minerals.
Hope that helps.
John