The stick-shift is the option and it's only available on the lower trims with less equipment and it's cheaper. A lot of auto writers refer to the AT as optional, it really is the default.
An example: http://blogs.cars.com/kickingtires/2014/04/honda-boosts-2015-fits-gas-mileage.html
An example: http://blogs.cars.com/kickingtires/2014/04/honda-boosts-2015-fits-gas-mileage.html