unfortunately that can happen with a lightweight frame.
I'm sure I'll end up doing something similar to my old NRS (actually the same age as yours )
I'm on my second frame, the first one cracked on the seat tube in a similar spot which was a known fatigue crack point on the first XTC/NRS ('00) frames. Later frames used a revised rocker pivot bracket and welding.
Giant replaced mine at the time, no questions asked, just took a little while to get a frame as later frames used a slightly different rear triangle and they wouldn't replace that too......
Ellsworth are a quality frame and builder, the only thing they may question is if the bike has been repeatedly jumped (shock bottomed) it would put a lot of load at that point. (seat tube would be in tension, which is better than compression) but you would think that the seat stays would crumple/crack first. (compression)